PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943246.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 436aa    MW: 47967.5 Da    PI: 6.9482
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943246.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.33.9e-115075126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    +++++C +++rtG C yG++C+++H+
  XP_010943246.1 50 PGEPNCIYYLRTGLCGYGSNCRYNHP 75
                    5789*********************9 PP

2zf-CCCH38.71.7e-1290115227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C+ff++tGtCk+G++Ck++H++
  XP_010943246.1  90 GQPDCQFFLKTGTCKFGATCKYHHPQ 115
                     6899********************97 PP

3zf-CCCH37.25e-12137160427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     + C++++rtG Ck+G  CkF+H++
  XP_010943246.1 137 KSCPYYMRTGLCKFGTACKFNHPQ 160
                     56********************97 PP

4zf-CCCH39.49.8e-13277302227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tG CkyG +Ck++H++
  XP_010943246.1 277 DQPECQYYMKTGSCKYGTSCKYHHPK 302
                     689*********************96 PP

5zf-CCCH27.46e-09322345427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     + C f+  +G CkyG++CkF H++
  XP_010943246.1 322 PVCTFYGMYGSCKYGSTCKFDHPF 345
                     78********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.0944977IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-54976IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-95175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-55475IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-45574IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-788115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.75188116IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-1090115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-693119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.00194115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502133161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6135161IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-5135160IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-9136160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4138159IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-6275302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.986275303IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-10277302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6278304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5281303IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-4318345IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.46318346IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-5320345IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-6322345IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-4323343IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MPDTRPVPSN AAADSSDACQ DNLEETMWQV KAEDCKGGDD AHRNPYPDRP GEPNCIYYLR  60
TGLCGYGSNC RYNHPDYIRQ GSGELPERDG QPDCQFFLKT GTCKFGATCK YHHPQDKHDP  120
HPVQLNILGL PLRKDEKSCP YYMRTGLCKF GTACKFNHPQ PTSHATMLPV TGPSPYGSTG  180
YPAASPSGLP LIAGLSMWPF SRPPYMSNQH IQGVPCMSLV LPPTQGAMPV QQGWSTDTGG  240
INNVASAGVV GSTQISNPKH HAQSGSSTPV NFPERPDQPE CQYYMKTGSC KYGTSCKYHH  300
PKERNQVAMC TIGPLGLPLR PPVCTFYGMY GSCKYGSTCK FDHPFMGYYN YTLPAFSLPG  360
VPDHTVLFSD SRNSQAMWMP SEDSPSKTMR LLDQHVKSET SEEPQGSDDN NHGNHSTQTS  420
PSHIAHHSES PEKYSD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943246.10.0PREDICTED: zinc finger CCCH domain-containing protein 33-like isoform X2
TrEMBLM0SII71e-172M0SII7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P28210_0011e-172(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-87C3H family protein